FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004955757

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955757
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97494
Sequences flagged as poor quality0
Sequence length150-4264
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGCGGATGAACATAGGATAGCGATTCTTAA14391.475988265944571No Hit
GTTACGTATTGCTGGTGCTGCGGATGAACATAGGATAGCGATTCTTAACC7420.761072476254949No Hit
AGTTACGTATTGCTGGTGCTGCGGATGAACATAGGATAGCGATTCTTAAC3500.3589964510636552No Hit
GCGTTACGTATTGCTGGTGCTGCGGATGAACATAGGATAGCGATTCTTAA3050.3128397644983281No Hit
CCAGTTACGTATTGCTGGTGCTGCGGATGAACATAGGATAGCGATTCTTA2680.27488871110017027No Hit
TTTACGTATTGCTGGTGCTGCGGATGAACATAGGATAGCGATTCTTAACC2090.21437216649229696No Hit
TGGTTACGTATTGCTGGTGCTGCGGATGAACATAGGATAGCGATTCTTAA1810.18565245040720454No Hit
GGTTACGTATTGCTGGTGCTGCGGATGAACATAGGATAGCGATTCTTAAC1570.16103555090569677No Hit
AAAGTTACGTATTGCTGGTGCTGCGGATGAACATAGGATAGCGATTCTTA1460.14975280530083904No Hit
CGTTACGTATTGCTGGTGCTGCGGATGAACATAGGATAGCGATTCTTAAC1400.14359858042546209No Hit
TGCCATGTATTGCTGGTGCTGCGGATGAACATAGGATAGCGATTCTTAAC1310.13436724311239664No Hit
TAAGTTACGTATTGCTGGTGCTGCGGATGAACATAGGATAGCGATTCTTA1300.1333415389665005No Hit
CAGTTACGTATTGCTGGTGCGGATGAACATAGGATAGCGATTCTTAACCT1270.13026442652881204No Hit
AGGTTACGTATTGCTGGTGCTGCGGATGAACATAGGATAGCGATTCTTAA1040.1066732311732004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)