FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004955758

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955758
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13059
Sequences flagged as poor quality0
Sequence length150-2488
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGGGAGTTCGTCCAGAGAAGTACACGTTAA1851.4166475227812236No Hit
GTTACGTATTGCTGGTGCTGGGAGTTCGTCCAGAGAAGTACACGTTAACC760.5819741174668811No Hit
CCAGTTACGTATTGCTGGTGCTGGGAGTTCGTCCAGAGAAGTACACGTTA550.42116547974576923No Hit
GCGTTACGTATTGCTGGTGCTGGGAGTTCGTCCAGAGAAGTACACGTTAA450.34458993797381116No Hit
CAGTTACGTATTGCTGGTGCTGGGAGTTCGTCCAGAAGTACACGTTAACC420.32161727544222374No Hit
AGTTACGTATTGCTGGTGCTGGGAGTTCGTCCAGAGAAGTACACGTTAAC380.29098705873344055No Hit
CAGTTACGTATTGCTGGTGCTGGAGTTCGTCCAGAGAAGTACACGTTAAC340.2603568420246573No Hit
TGGTTACGTATTGCTGGTGCTGGGAGTTCGTCCAGAGAAGTACACGTTAA330.25269928784746154No Hit
GTTACGTATTGCTGGTGCTGGAGTTCGTCCAGAGAAGTACACGTTAACCT290.22206907113867833No Hit
TTTACGTATTGCTGGTGCTGGGAGTTCGTCCAGAGAAGTACACGTTAACC210.16080863772111187No Hit
GGTTACGTATTGCTGGTGCTGGGAGTTCGTCCAGAGAAGTACACGTTAAC200.15315108354391607No Hit
CAGTTACGTATTGCTGGTGCTGGGAGTTCGTCCAGAGAAGTACGTTAACC160.12252086683513287No Hit
TGCCATGTATTGCTGGTGCTGGGAGTTCGTCCAGAGAAGTACACGTTAAC160.12252086683513287No Hit
GTTACGTATTGCTGGTGCTGGGAGTTCGTCCAGAAGTACACGTTAACCTA150.11486331265793705No Hit
AGGTTACGTATTGCTGGTGCTGGGAGTTCGTCCAGAGAAGTACACGTTAA140.10720575848074125No Hit
TAAGTTACGTATTGCTGGTGCTGGGAGTTCGTCCAGAGAAGTACACGTTA140.10720575848074125No Hit
CAGTTACGTATTGCTGGTGCTGGGGAGTTCGTCCAGAGAAGTACACGTTA140.10720575848074125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)