FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37600
Sequences flagged as poor quality0
Sequence length150-2265
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGACCGAGATCCTACGAATGGAGTGTTTAA5161.372340425531915No Hit
GTTACGTATTGCTGGTGCTGACCGAGATCCTACGAATGGAGTGTTTAACC2580.6861702127659575No Hit
CCAGTTACGTATTGCTGGTGCTGACCGAGATCCTACGAATGGAGTGTTTA1330.3537234042553192No Hit
GCGTTACGTATTGCTGGTGCTGACCGAGATCCTACGAATGGAGTGTTTAA1290.34308510638297873No Hit
AGTTACGTATTGCTGGTGCTGACCGAGATCCTACGAATGGAGTGTTTAAC1230.3271276595744681No Hit
CAGTTACGTATTGCTGGTGCTGACCGAGATCCTACGAATGAGTGTTTAAC790.2101063829787234No Hit
TGGTTACGTATTGCTGGTGCTGACCGAGATCCTACGAATGGAGTGTTTAA720.19148936170212766No Hit
TTTACGTATTGCTGGTGCTGACCGAGATCCTACGAATGGAGTGTTTAACC580.15425531914893617No Hit
GGTTACGTATTGCTGGTGCTGACCGAGATCCTACGAATGGAGTGTTTAAC500.13297872340425532No Hit
CGTTACGTATTGCTGGTGCTGACCGAGATCCTACGAATGGAGTGTTTAAC460.12234042553191489No Hit
AAAGTTACGTATTGCTGGTGCTGACCGAGATCCTACGAATGGAGTGTTTA440.11702127659574468No Hit
TGCCACGTATTGCTGGTGCTGACCGAGATCCTACGAATGGAGTGTTTAAC390.10372340425531913No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)