FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32145
Sequences flagged as poor quality0
Sequence length150-2016
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGGCTGTGTTCCACTTCATTCTCCTGTTAA4371.3594649245605848No Hit
GTTACGTATTGCTGGTGCTGGCTGTGTTCCACTTCATTCTCCTGTTAACC2170.6750661067039975No Hit
AGTTACGTATTGCTGGTGCTGGCTGTGTTCCACTTCATTCTCCTGTTAAC1070.3328666977757039No Hit
CCAGTTACGTATTGCTGGTGCTGGCTGTGTTCCACTTCATTCTCCTGTTA1000.31109037175299425No Hit
GCGTTACGTATTGCTGGTGCTGGCTGTGTTCCACTTCATTCTCCTGTTAA900.2799813345776948No Hit
TTTACGTATTGCTGGTGCTGGCTGTGTTCCACTTCATTCTCCTGTTAACC740.23020687509721574No Hit
TGGTTACGTATTGCTGGTGCTGGCTGTGTTCCACTTCATTCTCCTGTTAA690.21465235650956604No Hit
CGTTACGTATTGCTGGTGCTGGCTGTGTTCCACTTCATTCTCCTGTTAAC570.17732151189920672No Hit
GGTTACGTATTGCTGGTGCTGGCTGTGTTCCACTTCATTCTCCTGTTAAC560.17421060818167677No Hit
TAAGTTACGTATTGCTGGTGCTGGCTGTGTTCCACTTCATTCTCCTGTTA550.17109970446414685No Hit
AAAGTTACGTATTGCTGGTGCTGGCTGTGTTCCACTTCATTCTCCTGTTA480.14932337844143723No Hit
CAGTTACGTATTGCTGGTGCTGGCTGTTCCACTTCATTCTCCTGTTAACC480.14932337844143723No Hit
CAGTTACGTATTGCTGGTGCTGGCTGTGTTCACTTCATTCTCCTGTTAAC440.13687976357131748No Hit
AGGTTACGTATTGCTGGTGCTGGCTGTGTTCCACTTCATTCTCCTGTTAA430.1337688598537875No Hit
GCCATGTATTGCTGGTGCTGGCTGTGTTCCACTTCATTCTCCTGTTAACC410.12754705241872763No Hit
TGCCACGTATTGCTGGTGCTGGCTGTGTTCCACTTCATTCTCCTGTTAAC370.11510343754860787No Hit
AAGTTACGTATTGCTGGTGCTGGCTGTGTTCCACTTCATTCTCCTGTTAA370.11510343754860787No Hit
GTTACGTATTGCTGGTGCTGGCTGTGTTCACTTCATTCTCCTGTTAACCT330.10265982267848811No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)