FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004955763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9896
Sequences flagged as poor quality0
Sequence length151-2068
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTACGTATTGCTGGTGCTGCTTACTACCCAGTGAACCTCCTCGTTAACC880.8892481810832661No Hit
CAGTTACGTATTGCTGGTGCTGCTTACTACCCAGTGAACCTCCTCGTTAA480.4850444624090542No Hit
TTTACGTATTGCTGGTGCTGCTTACTACCCAGTGAACCTCCTCGTTAACC340.34357316087308004No Hit
AGTTACGTATTGCTGGTGCTGCTTACTACCCAGTGAACCTCCTCGTTAAC260.2627324171382377No Hit
GCGTTACGTATTGCTGGTGCTGCTTACTACCCAGTGAACCTCCTCGTTAA180.1818916734033953No Hit
TGGTTACGTATTGCTGGTGCTGCTTACTACCCAGTGAACCTCCTCGTTAA130.13136620856911885No Hit
CCAGTTACGTATTGCTGGTGCTGCTTACTACCCAGTGAACCTCCTCGTTA130.13136620856911885No Hit
GCCATGTATTGCTGGTGCTGCTTACTACCCAGTGAACCTCCTCGTTAACC120.12126111560226355No Hit
GGTTACGTATTGCTGGTGCTGCTTACTACCCAGTGAACCTCCTCGTTAAC120.12126111560226355No Hit
CGTTACGTATTGCTGGTGCTGCTTACTACCCAGTGAACCTCCTCGTTAAC110.11115602263540826No Hit
TGCCACGTATTGCTGGTGCTGCTTACTACCCAGTGAACCTCCTCGTTAAC110.11115602263540826No Hit
TGCCATGTATTGCTGGTGCTGCTTACTACCCAGTGAACCTCCTCGTTAAC100.10105092966855296No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)