FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27771
Sequences flagged as poor quality0
Sequence length151-2491
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGCAGGTAGAAAGAAGCAGAATCGGATTAA2911.0478556767851355No Hit
GTTACGTATTGCTGGTGCTGCAGGTAGAAAGAAGCAGAATCGGATTAACC1470.5293291563141406No Hit
GCGTTACGTATTGCTGGTGCTGCAGGTAGAAAGAAGCAGAATCGGATTAA750.27006589607864323No Hit
CCAGTTACGTATTGCTGGTGCTGCAGGTAGAAAGAAGCAGAATCGGATTA670.2412588671635879No Hit
AGTTACGTATTGCTGGTGCTGCAGGTAGAAAGAAGCAGAATCGGATTAAC570.2052500810197688No Hit
TGGTTACGTATTGCTGGTGCTGCAGGTAGAAAGAAGCAGAATCGGATTAA500.18004393071909547No Hit
TTTACGTATTGCTGGTGCTGCAGGTAGAAAGAAGCAGAATCGGATTAACC470.16924129487594974No Hit
GGTTACGTATTGCTGGTGCTGCAGGTAGAAAGAAGCAGAATCGGATTAAC370.13323250873213063No Hit
AGGTTACGTATTGCTGGTGCTGCAGGTAGAAAGAAGCAGAATCGGATTAA300.10802635843145728No Hit
GCCATGTATTGCTGGTGCTGCAGGTAGAAAGAAGCAGAATCGGATTAACC280.10082460120269346No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)