FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19481
Sequences flagged as poor quality0
Sequence length150-1881
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGAGGTCTACCTCGCTAACACCACTGTTAA2131.0933730301319233No Hit
GTTACGTATTGCTGGTGCTGAGGTCTACCTCGCTAACACCACTGTTAACC1420.7289153534212823No Hit
CCAGTTACGTATTGCTGGTGCTGAGGTCTACCTCGCTAACACCACTGTTA750.3849905035675787No Hit
GCGTTACGTATTGCTGGTGCTGAGGTCTACCTCGCTAACACCACTGTTAA700.3593244699964067No Hit
AGTTACGTATTGCTGGTGCTGAGGTCTACCTCGCTAACACCACTGTTAAC550.282326369282891No Hit
TGGTTACGTATTGCTGGTGCTGAGGTCTACCTCGCTAACACCACTGTTAA520.2669267491401879No Hit
TTTACGTATTGCTGGTGCTGAGGTCTACCTCGCTAACACCACTGTTAACC490.25152712899748475No Hit
GGTTACGTATTGCTGGTGCTGAGGTCTACCTCGCTAACACCACTGTTAAC330.16939582156973462No Hit
AGGTTACGTATTGCTGGTGCTGAGGTCTACCTCGCTAACACCACTGTTAA260.13346337457009394No Hit
TGCCATGTATTGCTGGTGCTGAGGTCTACCTCGCTAACACCACTGTTAAC240.12319696114162516No Hit
TGCCACGTATTGCTGGTGCTGAGGTCTACCTCGCTAACACCACTGTTAAC200.10266413428468765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)