FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31090
Sequences flagged as poor quality0
Sequence length150-2846
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGTACATGCTCCTGTTGTTAGGAGGTTAAC2280.7333547764554519No Hit
CAGTTACGTATTGCTGGTGCTGTACATGCTCCTGTTGTTAGGGAGGTTAA1830.5886137021550337No Hit
GTTACGTATTGCTGGTGCTGTACATGCTCCTGTTGTTAGGAGGTTAACCT1170.3763267931810872No Hit
GTTACGTATTGCTGGTGCTGTACATGCTCCTGTTGTTAGGGAGGTTAACC990.3184303634609199No Hit
AGTTACGTATTGCTGGTGCTGTACATGCTCCTGTTGTTAGGAGGTTAACC570.18333869411386297No Hit
GCGTTACGTATTGCTGGTGCTGTACATGCTCCTGTTGTTAGGGAGGTTAA540.17368928916050178No Hit
CCAGTTACGTATTGCTGGTGCTGTACATGCTCCTGTTGTTAGGGAGGTTA520.16725635252492763No Hit
CCAGTTACGTATTGCTGGTGCTGTACATGCTCCTGTTGTTAGGAGGTTAA500.16082341588935348No Hit
GCGTTACGTATTGCTGGTGCTGTACATGCTCCTGTTGTTAGGAGGTTAAC490.1576069475715664No Hit
AGTTACGTATTGCTGGTGCTGTACATGCTCCTGTTGTTAGGGAGGTTAAC410.13187520102926986No Hit
TTTACGTATTGCTGGTGCTGTACATGCTCCTGTTGTTAGGGAGGTTAACC410.13187520102926986No Hit
TTTACGTATTGCTGGTGCTGTACATGCTCCTGTTGTTAGGAGGTTAACCT380.12222579607590865No Hit
TGGTTACGTATTGCTGGTGCTGTACATGCTCCTGTTGTTAGGGAGGTTAA370.11900932775812158No Hit
TGGTTACGTATTGCTGGTGCTGTACATGCTCCTGTTGTTAGGAGGTTAAC330.10614345448697331No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)