FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39349
Sequences flagged as poor quality0
Sequence length150-1992
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGGTTCCTCGTGCAGTGTCAAGAGATTTAA6151.5629367963607717No Hit
GTTACGTATTGCTGGTGCTGGTTCCTCGTGCAGTGTCAAGAGATTTAACC3030.770032275280185No Hit
CCAGTTACGTATTGCTGGTGCTGGTTCCTCGTGCAGTGTCAAGAGATTTA1520.386286817962337No Hit
AGTTACGTATTGCTGGTGCTGGTTCCTCGTGCAGTGTCAAGAGATTTAAC1470.3735800147398917No Hit
CAGTTACGTATTGCTGGTGCTGGTTCTCGTGCAGTGTCAAGAGATTTAAC1260.3202114412056215No Hit
GCGTTACGTATTGCTGGTGCTGGTTCCTCGTGCAGTGTCAAGAGATTTAA1220.31004599862766524No Hit
TTTACGTATTGCTGGTGCTGGTTCCTCGTGCAGTGTCAAGAGATTTAACC1000.2541360644489059No Hit
TGGTTACGTATTGCTGGTGCTGGTTCCTCGTGCAGTGTCAAGAGATTTAA780.19822613027014663No Hit
GGTTACGTATTGCTGGTGCTGGTTCCTCGTGCAGTGTCAAGAGATTTAAC660.16772980253627792No Hit
GTTACGTATTGCTGGTGCTGGTTCTCGTGCAGTGTCAAGAGATTTAACCT590.1499402780248545No Hit
CGTTACGTATTGCTGGTGCTGGTTCCTCGTGCAGTGTCAAGAGATTTAAC590.1499402780248545No Hit
AAAGTTACGTATTGCTGGTGCTGGTTCCTCGTGCAGTGTCAAGAGATTTA570.14485755673587639No Hit
CAGTTACGTATTGCTGGTGCTGGTTCCTCGTGCAGTGTCAAGATTTAACC440.11181986835751861No Hit
TAAGTTACGTATTGCTGGTGCTGGTTCCTCGTGCAGTGTCAAGAGATTTA430.10927850771302956No Hit
TGCCATGTATTGCTGGTGCTGGTTCCTCGTGCAGTGTCAAGAGATTTAAC420.10673714706854051No Hit
GCCATGTATTGCTGGTGCTGGTTCCTCGTGCAGTGTCAAGAGATTTAACC420.10673714706854051No Hit
TGCCACGTATTGCTGGTGCTGGTTCCTCGTGCAGTGTCAAGAGATTTAAC420.10673714706854051No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)