FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004955768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46837
Sequences flagged as poor quality0
Sequence length150-2250
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGAGTTTCCATCACTTCAGACTTGGGTTAA7021.4988150393919337No Hit
GTTACGTATTGCTGGTGCTGAGTTTCCATCACTTCAGACTTGGGTTAACC3420.7301919422678651No Hit
GCGTTACGTATTGCTGGTGCTGAGTTTCCATCACTTCAGACTTGGGTTAA2050.4376881525289835No Hit
CCAGTTACGTATTGCTGGTGCTGAGTTTCCATCACTTCAGACTTGGGTTA1950.4163375109422038No Hit
AGTTACGTATTGCTGGTGCTGAGTTTCCATCACTTCAGACTTGGGTTAAC1310.2796934047868138No Hit
TGGTTACGTATTGCTGGTGCTGAGTTTCCATCACTTCAGACTTGGGTTAA1280.27328821231077993No Hit
CAGTTACGTATTGCTGGTGCTGAGTTTCATCACTTCAGACTTGGGTTAAC1080.23058692913722056No Hit
TTTACGTATTGCTGGTGCTGAGTTTCCATCACTTCAGACTTGGGTTAACC1010.2156414800264748No Hit
CGTTACGTATTGCTGGTGCTGAGTTTCCATCACTTCAGACTTGGGTTAAC910.1942908384396951No Hit
GGTTACGTATTGCTGGTGCTGAGTTTCCATCACTTCAGACTTGGGTTAAC720.15372461942481372No Hit
CAGTTACGTATTGCTGGTGCTGAGTTCCATCACTTCAGACTTGGGTTAAC680.14518436279010186No Hit
AAAGTTACGTATTGCTGGTGCTGAGTTTCCATCACTTCAGACTTGGGTTA660.1409142344727459No Hit
GTTACGTATTGCTGGTGCTGAGTTTCATCACTTCAGACTTGGGTTAACCT610.13023891367935606No Hit
TAAGTTACGTATTGCTGGTGCTGAGTTTCCATCACTTCAGACTTGGGTTA590.12596878536200012No Hit
CAGTTACGTATTGCTGGTGCTGAGTTTCCATCACTTCAGACTTGGTTAAC570.1216986570446442No Hit
AGGTTACGTATTGCTGGTGCTGAGTTTCCATCACTTCAGACTTGGGTTAA540.11529346456861028No Hit
CGGTTACGTATTGCTGGTGCTGAGTTTCCATCACTTCAGACTTGGGTTAA520.11102333625125436No Hit
CAAGTTACGTATTGCTGGTGCTGAGTTTCCATCACTTCAGACTTGGGTTA490.10461814377522044No Hit
TGCCATGTATTGCTGGTGCTGAGTTTCCATCACTTCAGACTTGGGTTAAC470.10034801545786452No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)