FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004955770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11236
Sequences flagged as poor quality0
Sequence length151-2016
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTACGTATTGCTGGTGCTGTCAGTGAGGATCTACTTCGACCCATTAA1000.8899964400142399No Hit
GTTACGTATTGCTGGTGCTGTCAGTGAGGATCTACTTCGACCCATTAACC850.7564969740121039No Hit
AGTTACGTATTGCTGGTGCTGTCAGTGAGGATCTACTTCGACCCATTAAC310.2758988964044144No Hit
TTTACGTATTGCTGGTGCTGTCAGTGAGGATCTACTTCGACCCATTAACC260.2313990744037024No Hit
GCGTTACGTATTGCTGGTGCTGTCAGTGAGGATCTACTTCGACCCATTAA250.22249911000355999No Hit
CCAGTTACGTATTGCTGGTGCTGTCAGTGAGGATCTACTTCGACCCATTA250.22249911000355999No Hit
GCCATGTATTGCTGGTGCTGTCAGTGAGGATCTACTTCGACCCATTAACC240.21359914560341758No Hit
TGCCATGTATTGCTGGTGCTGTCAGTGAGGATCTACTTCGACCCATTAAC230.2046991812032752No Hit
GGTTACGTATTGCTGGTGCTGTCAGTGAGGATCTACTTCGACCCATTAAC150.133499466002136No Hit
TGGTTACGTATTGCTGGTGCTGTCAGTGAGGATCTACTTCGACCCATTAA130.1156995372018512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)