FastQCFastQC Report
Thu 23 May 2024
EGAF00004955828

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955828
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85710334
Total Bases8.6 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAACGGAGCA1083030.12635932558610727No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG889290.10375528346441866No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)