FastQCFastQC Report
Wed 22 May 2024
EGAF00004955854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98576550
Total Bases9.9 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT1282560.13010802264838847No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG1059060.10743528760136158No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC1024440.10392329615917782No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)