FastQCFastQC Report
Sat 25 May 2024
EGAF00004955866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100649759
Total Bases9.6 Gbp
Sequences flagged as poor quality0
Sequence length96
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT1190500.11828145559692796No Hit
CACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAACGGAGCA1018430.10118553786104942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)