FastQCFastQC Report
Mon 13 May 2024
EGAF00004955870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88311193
Total Bases8.9 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG1314790.1488814673809242No Hit
CCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTT884550.10016284119273534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)