FastQCFastQC Report
Sun 19 May 2024
EGAF00004955882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004955882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences171030474
Total Bases17.2 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG1962100.11472224534675615No Hit
GTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGGGGGAC1825980.1067634297733397No Hit
CACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAACGGAGCA1811920.10594135405366414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)