Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004955955 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 23043991 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-76 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCCGTAT | 2535 | 0.0 | 22.769901 | 1 |
CGTATCG | 1820 | 0.0 | 22.537657 | 3 |
CCGTATC | 2685 | 0.0 | 17.866657 | 2 |
TCGACGT | 2215 | 0.0 | 16.949564 | 2 |
GTCCGAT | 2155 | 0.0 | 15.974194 | 1 |
GTCCGTT | 2285 | 0.0 | 15.217552 | 1 |
ATCGCGC | 2520 | 0.0 | 14.993158 | 67 |
CTCGACG | 2885 | 0.0 | 14.342741 | 1 |
CGACGTC | 2585 | 0.0 | 13.716324 | 3 |
TACCGCG | 1435 | 0.0 | 13.3231535 | 22 |
CGCGCCA | 3185 | 0.0 | 13.181339 | 69 |
TACATCG | 2960 | 0.0 | 13.168447 | 64 |
CATCGCG | 2940 | 0.0 | 13.039066 | 66 |
TCCGATT | 4165 | 0.0 | 12.769823 | 2 |
TCGCGCC | 3045 | 0.0 | 12.651531 | 68 |
CTCGTAT | 1925 | 0.0 | 12.463768 | 1 |
ATCGAAG | 4390 | 0.0 | 12.352381 | 6 |
CCCGTCT | 7230 | 0.0 | 12.312115 | 1 |
GCCGTTA | 1490 | 0.0 | 12.131467 | 29 |
CGTGTTA | 3125 | 0.0 | 11.7989235 | 59 |