EGAF00004955987 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004955987
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14210113
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAATCTAAAACTTCGATTTGCAACTTACC	61626	0.4336770580219876	No Hit
AGTATGGCCCGGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACC	60656	0.42685093355696746	No Hit
AGTATGGCCCGGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTA	45479	0.3200467160254109	No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTG	44606	0.31390320400689287	No Hit
AGTATGGCCCGGGGGATCCTAGAGACCATTCGCGATTCCATGAGACTCCA	37836	0.26626107758608253	No Hit
AGTATGGCCCGGGGGATCCGTATACGTTTCTAATTTGTAGTTAACGGTTG	36159	0.25445962322748594	No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCAGAAGACCTAAGCTAGC	33685	0.23704948722082647	No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCGTCTTCAGAGGGGGATAGCATGACCTCACGCCTTCTATAAA	33207	0.23368568568033202	No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCTCTAAACGTGGTAAATT	21674	0.15252517696375814	No Hit
AGTATGGCCCGGGGGATCCGTTAGCTATCGTTCGCGAGAAAGTTAGTAGACACACAGGACCCAGGCGTGCAAGTC	21304	0.1499213975286474	No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACG	16918	0.11905605536001015	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGGCC	29835	53.677372	3
GTATGGC	30480	52.54259	2
AGTATGG	30090	52.27815	1
TCGTATG	2060	50.80236	45
ACTTACC	9335	50.744915	69
TGGCCCG	31695	50.373802	5
CCGGGGG	31830	50.181995	9
CGGGGGA	32485	49.14877	10
GGGGATC	32780	48.833714	12
TATGCCG	2165	48.18385	48
CCCGGGG	33280	48.016468	8
GGGATCC	33655	47.553753	13
CGTATGC	2225	46.880882	46
ATGGCCC	34170	46.755646	4
TCCTACG	9395	46.28706	17
GCCCGGG	34770	45.948822	7
TAATATG	8575	45.504158	70
GATCCTA	15845	45.50044	15
GGCCCGG	35270	45.29744	6
ATCCTAC	9920	43.83739	16