EGAF00004955989 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004955989
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17094748
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGTATGGCCCGGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACC	71130	0.4160927087079611	No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAATCTAAAACTTCGATTTGCAACTTACC	70714	0.41365921275938083	No Hit
AGTATGGCCCGGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTA	51897	0.3035844693352602	No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTG	51871	0.3034323758384739	No Hit
AGTATGGCCCGGGGGATCCTAGAGACCATTCGCGATTCCATGAGACTCCA	41094	0.2403896214205673	No Hit
AGTATGGCCCGGGGGATCCGTATACGTTTCTAATTTGTAGTTAACGGTTG	37302	0.21820736988927827	No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCGTCTTCAGAGGGGGATAGCATGACCTCACGCCTTCTATAAA	36558	0.21385515598124055	No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCAGAAGACCTAAGCTAGC	34249	0.20034808351664501	No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACG	23127	0.1352871653913822	No Hit
CTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAATCTAAAACTTCGATTTGCAACTTACCAAACAAAAAGAGC	21463	0.12555318159706128	No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCTCTAAACGTGGTAAATT	20882	0.1221544769188759	No Hit
AGTATGGCCCGGGGGATCCGTTAGCTATCGTTCGCGAGAAAGTTAGTAGACACACAGGACCCAGGCGTGCAAGTC	20782	0.12156950193123642	No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCGTCTTC	18300	0.10705042273802456	No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTG	18046	0.1055645862694203	No Hit
CTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTGAGGGTTATAAGCT	17234	0.10081458936978772	No Hit
GATCCGTATACGTTTCTAATTTGTAGTTAACGGTTGGATACCACTTTGAG	17191	0.10056305012510275	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCTAT	4025	62.35706	37
CCTAGCG	4320	59.141518	33
CTAGCGC	4330	58.76427	34
AGCGCTA	4400	57.91059	36
CGCTATC	4155	57.897972	38
TATGCCG	3795	54.704327	48
TCGTATG	3725	53.671005	45
CGTATGC	3975	52.133415	46
TATGGCC	34090	51.217384	3
CATACTA	13630	50.112137	5
AGTATGG	34450	49.920715	1
GTATGGC	35180	49.652	2
CTAGTAC	13920	48.893333	9
ACCTAGC	5320	48.154808	32
CGGGGGA	36630	47.71276	10
TGGCCCG	36655	47.632805	5
CCGGGGG	36620	47.592903	9
ATACTAG	14600	46.711338	6
ACTTACC	12280	46.40884	69
TAGCGCT	5535	46.222713	35