Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004961829 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8412975 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACGAC | 240 | 3.5789526E-7 | 22.305735 | 3 |
CTATACT | 3025 | 0.0 | 20.449995 | 4 |
TATACTG | 4910 | 0.0 | 19.988846 | 5 |
TCGTGTG | 6645 | 0.0 | 18.439308 | 9 |
GTCGTGT | 4510 | 0.0 | 18.332142 | 8 |
GGGTCGT | 4645 | 0.0 | 18.183613 | 6 |
GGTCGTG | 4660 | 0.0 | 18.124973 | 7 |
TCTATAC | 2300 | 0.0 | 18.103205 | 3 |
CGTAGCG | 330 | 3.7844984E-7 | 18.025158 | 2 |
GTCTAGG | 4060 | 0.0 | 18.021683 | 1 |
CTACGAC | 700 | 0.0 | 17.84459 | 3 |
CTTACAC | 4485 | 0.0 | 17.63902 | 3 |
AGGGTCG | 5230 | 0.0 | 16.491175 | 5 |
GTGTAGG | 3845 | 0.0 | 16.399317 | 1 |
GTATAGG | 2035 | 0.0 | 16.369667 | 1 |
GTCCTAG | 3730 | 0.0 | 15.948044 | 1 |
TAGACTG | 4610 | 0.0 | 15.870458 | 5 |
TACACTG | 4925 | 0.0 | 15.821599 | 5 |
TACGACA | 885 | 0.0 | 15.458589 | 4 |
CGATACG | 135 | 4.887999E-4 | 15.424918 | 116-117 |