Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004961863 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7853839 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACACTG | 4495 | 0.0 | 22.628698 | 5 |
GGGTCGT | 4625 | 0.0 | 21.735563 | 6 |
CTATACT | 2895 | 0.0 | 21.16282 | 4 |
GTGTAGG | 3660 | 0.0 | 21.128664 | 1 |
GTCGTGT | 4545 | 0.0 | 21.07033 | 8 |
TCGTGTG | 6780 | 0.0 | 20.879812 | 9 |
GGTCGTG | 4705 | 0.0 | 20.733728 | 7 |
AGGGTCG | 5060 | 0.0 | 19.74931 | 5 |
CCTATAC | 2030 | 0.0 | 19.631834 | 3 |
TATACTG | 4265 | 0.0 | 19.386032 | 5 |
CGATACC | 2720 | 0.0 | 18.808876 | 118-119 |
GTACTAG | 1780 | 0.0 | 18.714481 | 1 |
GTATAGG | 1785 | 0.0 | 18.32881 | 1 |
TATATCG | 275 | 2.8754606E-5 | 17.304157 | 5 |
GTGTTAG | 4675 | 0.0 | 16.54137 | 1 |
GTATAGA | 2050 | 0.0 | 16.53982 | 1 |
GTCGTAG | 435 | 2.2835593E-8 | 16.409742 | 1 |
GTATACG | 435 | 2.2835593E-8 | 16.409742 | 1 |
TACACAG | 6855 | 0.0 | 16.226591 | 5 |
TACGACA | 660 | 0.0 | 16.222338 | 4 |