FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004962276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004962276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24311326
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG39850.015.61341648-49
TCGTATG47150.014.60600644-45
TCTCGTA51850.013.55681342-43
CTCGTAT47800.013.46345544-45
CGTATGC47450.013.1625546-47
AGGGCCG109600.012.9472431
ATGCCGT56300.012.31684248-49
AGGGGCG136100.011.3359641
AGGCGCC173100.011.2236651
AGGGTCG46550.010.9455011
AGGGGCC326750.010.7550491
AGGGGAC235700.010.3640471
AGGGTTT315950.010.3540431
AGGGTAC82550.010.1523651
AGGGACC231000.09.9977291
AGGGACG85400.09.9808321
ATCTCGT66050.09.95913542-43
AGGGGCA345100.09.686431
AGGGTCT337200.09.6591761
AGCGCGC38650.09.6098521
Produced by FastQC (version 0.11.5)