EGAF00004962356 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004962356
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20673035
Sequences flagged as poor quality	0
Sequence length	101
%GC	42

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	2555	0.0	12.276069	1
TCGGAAG	3180	0.0	9.70746	2
TATGCCG	1780	0.0	9.073425	46-47
TCTCGTA	2300	0.0	8.056353	42-43
CTCGTAT	2110	0.0	7.9936953	42-43
TATCTCG	2470	0.0	7.695246	40-41
CGGAAGA	4170	0.0	7.402776	3
ATGCCGT	2610	0.0	7.188712	48-49
CGTATGC	2280	0.0	7.084162	44-45
GCCGTCT	2730	0.0	6.9595613	50-51
TCGTATG	2800	0.0	6.701677	44-45
TGCCGTC	2605	0.0	6.3819704	48-49
ACACGTC	3215	0.0	6.130204	12-13
CTCTTCG	2950	0.0	5.960545	1
ATCTCGT	3225	0.0	5.672709	40-41
CTTCGCT	2205	1.0088297E-7	5.388125	1
ACGTCTG	4105	0.0	5.263894	14-15
CTATTAA	14650	0.0	5.2226934	1
CGTCTTC	3795	0.0	5.006362	52-53