FastQCFastQC Report
Tue 19 Apr 2022
EGAF00004962600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004962600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472184366
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA1262600.040.874111
TCGGAAG1402450.036.8417362
CGGAAGA1633250.031.6579573
TATGCCG797050.013.52996245-49
GCGCATC828850.012.98658935-39
AGAGCAC4374400.012.3896457
TAATGCG882200.012.33897230-34
AGCACAC4701400.011.6018379
CGTATGC934150.011.54424445-49
AATGCGC938200.011.31658630-34
GAGCACA4840150.011.3148988
CTCGTAT855700.011.2948340-44
GAAGAGC4935100.011.1747795
TGCGCAT1002300.010.89980335-39
TCTCGTA899550.010.71039740-44
ATGCGCA1027650.010.58013635-39
ATGCCGT1087300.010.15955245-49
TGCCGTC1095600.09.79012645-49
GCCGTCT1137450.09.58233350-54
CGCATCT1023850.09.53891335-39
Produced by FastQC (version 0.11.5)