FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004963713

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963713
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491510
Sequences flagged as poor quality0
Sequence length36-200
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGGTTGCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGAC11700.2380419523509186No Hit
CCCTTAACCTGGGCAGAGCCGTGGCTCAGGTCGAAGTGCGGGAAGTAGGT7570.1540151777176456No Hit
GCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGACTCAAAGAACC7040.14323208073080915No Hit
GGAGTGGACAGATCCCCAAAGGACTCAAAGAACCTCTGGGTCCAAGGGTA6220.12654879860023194No Hit
GTGTGGCAAAGGTGCCCTTGAGGTTGTCCAGGTGAGCCAGGCCATCACTA5110.10396533132591401No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)