FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21195
Sequences flagged as poor quality0
Sequence length36-200
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAACTTATCCTGCTTCAAGAAACGTGGTTGGGTGTCCCCAGCCAAAGCC1330.6275064873790989No Hit
CAAACTTATCCTGCTTCAAGAAACGTGGTCGGGTGTCCCCAGCCAAAGCC650.3066761028544468No Hit
GCACACGGTGTCCACCTCGGCCCGCCTCCGCTCCAGGAAGTCCTTCTGGC530.2500589761736258No Hit
GGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGAGGCTCCA490.23118660061335222No Hit
CTGCACACGGTGTCCACCTCGGCCCGCCTCCGCTCCAGGAAGTCCTTCTG450.21231422505307856No Hit
GTGTCTCCCGGTCCCAATACTCCGGCCCCTCCTGCTCCACCCACGGCGCC390.18400566171266808No Hit
GGGCCCGTTGGGAGGCCCAAGGGGCAAGAAGCATGGCCACCGAGGCTCCA370.17456947393253128No Hit
GTCAATGTCACTGTCAGCGCTGCCATACAGGAGCCTCCAGGGAGCTTCAG350.16513328615239442No Hit
GGTACAGGAAGTAGGCGGTGGTGGCCTGGCCAGCGAGGAGCAGAGTCACC340.160415192262326No Hit
GAGACAGCGTGGTGAGTCATATGCGTTTTGGGGGCGTCCGTGCGCTGCAG340.160415192262326No Hit
TGTTTAACCTGCTCCAAGAAACGTGGTCGGGTGTCCCCAGCCAAAGCCAG330.1556970983722576No Hit
CAAACTTATCCTGCTCCAAGAAACGTGGTCGGGTGTCCCCAGCCAAAGCC330.1556970983722576No Hit
GTGCAGATACCGCACCCGCTCCGTCCCGTTGAAGAAATGACACTCAAACT310.1462609105921208No Hit
GTGCAGATACCGCACCCGCTCCGTCCCGTTGAAGAAATGACACTCATGTT310.1462609105921208No Hit
CACACTTAGCCTGCTCCAAGAAACGTGGTTGGGTGTCCCCAGCCAAAGCC300.14154281670205238No Hit
CATGTTTAACCTGCTCCAAGAAACGTGGTCGGGTGTCCCCAGCCAAAGCC290.13682472281198396No Hit
CTCACCAACCCCGTAGTTGTGTCTGCACACGGTGTCCACCTCGGCCCGCC260.1226704411417787No Hit
CATGTTTAACCTGCTCCAAGAAACGTGGTTGGGTGTCCCCAGCCAAAGCC250.11795234725171032No Hit
CTCAAACTTATCCTGCTTCAAGAAACGTGGTTGGGTGTCCCCAGCCAAAG250.11795234725171032No Hit
ACTCTGACCCCTCCTGCTCCATCCACGGCGCCCGCGGCACCATCCTCGGA250.11795234725171032No Hit
GGATAGACTCGCCGCTGCACTGTGAAGCTCTCCACAACCCCGTAGTTGTG250.11795234725171032No Hit
GGGGCTCCCGGTCCCAATACTCCGGCCCCTCCTGCTCCACCCACGGCGCC240.1132342533616419No Hit
TGTTTAACCTGCTCCAAGAAACGTGGTTGGGTGTCCCCAGCCAAAGCCAG230.10851615947157349No Hit
GATGCCTCTGTGCAGATACCGCACCCGCTCCGTCCCGTTGAAGAAATGAC230.10851615947157349No Hit
GGGTCTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGG230.10851615947157349No Hit
AACTTATCCTGCTTCAAGAAACGTGGTTGGGTGTCCCCAGCCAAAGCCAG220.10379806558150506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)