FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004963731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences372919
Sequences flagged as poor quality0
Sequence length36-200
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGGTTGCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGAC6690.17939552556989588No Hit
CCCTTAACCTGGGCAGAGCCGTGGCTCAGGTCGAAGTGCGGGAAGTAGGT4670.12522826672816348No Hit
GCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGACTCAAAGAACC4100.10994344616391229No Hit
GGAGTGGACAGATCCCCAAAGGACTCAAAGAACCTCTGGGTCCAAGGGTA4090.10967529141717103No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)