FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12722
Sequences flagged as poor quality0
Sequence length36-200
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCACACGGTGTCCACCTGGCCCCGCCTGTCCTCCAGGATGTCCTTCTG230.1807891840905518No Hit
GGGCCCGTTGGGAGGCCCAAGGGGCAAGAAGCATGGCCACCGAGGCTCCA220.17292878478226695No Hit
GCACTGTGAAGCTCTCACCAACCCCGTAGTTGTGTCTGCAGTAGGTGTCC190.14934758685741237No Hit
CCTCCTGGTTATAGAAGAGTCTTTCCAGGAACTGCACCCGCTCCGTCCCG180.1414871875491275No Hit
GGTACAGGAAGTAGGCGGTGGTGGCCTGGCCAGCGAGGAGCAGAGTCACC170.13362678824084265No Hit
GCACACGGTGTCCACCTGGCCCCGCCTGTCCTCCAGGATGTCCTTCTGGC170.13362678824084265No Hit
GGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGAGGCTCCA160.1257663889325578No Hit
CACACTTAGCCTGCTCCAAGAAACGTGGTCGGGTGTCCCCAGCCAAAGCC160.1257663889325578No Hit
CCTTAGGGTTGCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGAC150.11790598962427293No Hit
GCCCCAGCTCCGTCACCGCCCGGTACTCCCCCACGTCGCTGTCGAAGCGC140.11004559031598807No Hit
GAGACAGCGTGGTGAGTCATATGCGTTTTGGGGGCGTCCGTGCGCTGCAG140.11004559031598807No Hit
GGCCCAGCATGGGCAGTTGCTCATTGTTGGAGATAAGGTCGCGCTGGTCA130.10218519100770321No Hit
GCACTGTGAAGCTCTCACCAACCCCGTAGTTGTGTCTGCACACGGTGTCC130.10218519100770321No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)