FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004963751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences580850
Sequences flagged as poor quality0
Sequence length36-200
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGGTTGCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGAC10110.17405526383747955No Hit
CCCTTAACCTGGGCAGAGCCGTGGCTCAGGTCGAAGTGCGGGAAGTAGGT7450.1282603081690626No Hit
GCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGACTCAAAGAACC6410.11035551347163639No Hit
CCGGAGGGTTGCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGAC6290.10828957562193336No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)