FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963753

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963753
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30097
Sequences flagged as poor quality0
Sequence length36-200
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCACCGGGGTGCTCAGCATCGCCAGCATCAAGGTCACAGTTGCTACCCG1040.3455493903046815No Hit
GGCTCAACTCGCCGCTGCACTGTGAAGCTCTCACCAACCCCGTAGTTGTG780.2591620427285112No Hit
CCACCGCGGCCCGCCTCTGCTCCAGGAGGTCCTTCTGGCTGTTCCAGTAC710.23590391068877298No Hit
CACGTACTCCTCTTGGTGATAGAAGTATCTGTCCAGGAACCGCACCCGCT600.19935541748347013No Hit
GGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGAGGCTCCA470.1561617436953849No Hit
GCACTGTGAAGCTCTCACCAACCCCGTAGTTGTGTCTGCAGTAGGTGTCC450.14951656311260259No Hit
GAGACAGCGTGGTGAGTCATATGCGTTTTGGGGGCGTCCGTGCGCTGCAG440.1461939728212114No Hit
CACCCCGCACGCGCTCCGTCCCGTTGGTGAAGTAGCACAGGCCCTTAAAC430.14287138252982023No Hit
ACTCCTCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACG370.12293584078147324No Hit
GCCACCGGGGTGCTCAGGATCGCCAGCATCAAGGTGACAGTTGCTACCCG360.11961325049008208No Hit
CACGGACTCCTCTTGGTGATAGAAGTATCTGTCCAGGAACCGCACCCGCT360.11961325049008208No Hit
GTGTCTCCCGGTCCCAATACTCCGGCCCCTCCTGCTCTATCCACGGCGCC360.11961325049008208No Hit
CACCCCGCACGCGCTCCGTCCCGTTGGTGAAGTAGCACATGCCCTTAAAC350.11629066019869089No Hit
CCACCGCGGCCCGCTTCTGCTCCAGGAGGTCCTTCTGGCTGTTCCAGTAC330.10964547961590856No Hit
TAGAAGTATCTGTCCAGGAACCGCACCCGCTCCGTCCCGTTGAAGAAATG330.10964547961590856No Hit
CTCCTCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGT330.10964547961590856No Hit
CCCCAGCTCCGTCACCGCCCGGTACTCCCCCACGTCGCTGTCGAAGCGCA320.10632288932451739No Hit
GGTACAGGAAGTAGGCGGTGGTGGCCTGGCCAGCGAGGAGCAGAGTCACC320.10632288932451739No Hit
GCCACAAGAAACGTGGTCGGGTGTCCCCAGCCAAAGCCAGTGGGGAGCTC310.10300029903312623No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)