FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6184
Sequences flagged as poor quality0
Sequence length36-200
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACATCCTGTCCGGCACTGCCCGCTTCTCCTCCAGGAGGTCCTTCTGGC270.43661060802069857No Hit
GCATACCCTGTCCGGCACTGCCCGCTTCTCCTCCAGGAGGTCCTTCTGGC240.38809831824062097No Hit
GGTACAGGAAGTAGGCGGTGGTGGCCTGGCCAGCGAGGAGCAGAGTCACC200.3234152652005175No Hit
CCACCGCGGCCCGCCTCTGCTCCAGGAGGTCCTTCTGGCTGTTCCAGTAC200.3234152652005175No Hit
CTCGTCTTCCAGGATGTCCTTCTGGCTGTTCCAGTACTCGGCATCAGGCC190.30724450194049163No Hit
CTGCACATCCTGTCCGGCACTGCCCGCTTCTCCTCCAGGAGGTCCTTCTG140.22639068564036222No Hit
CTCCACAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCGCGGCCCGCT130.21021992238033632No Hit
GAGACGGGATGGTGGGTCACGTGTGTCTTTGGGTGTTCCGCGCGCTGCAG100.16170763260025875No Hit
GCACTGTGAAGCTCTCCACAACCCCGTAGTTGTGTCTGCAGTAGGTGTCC100.16170763260025875No Hit
GGGCCCGTTGGGAGGCCCAAGGGGCAAGAAGCATGGCCACCGAGGCTCCA90.14553686934023286No Hit
GGCTCAACTCGCCGCTGCACTGTGAAGCTCTCACCAACCCCGTAGTTGTG90.14553686934023286No Hit
CACGTTCTCCTCCTGGTTATGGAAGTATCTGTCCAGGAACCGCACCCGCT80.129366106080207No Hit
GGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGAGGCTCCA70.11319534282018111No Hit
CTCACCAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCGCGGCCCGCC70.11319534282018111No Hit
GGGTCTTTGAAGGATACACAGTCACCTTAGGCTCAACTCGCCGCTGCACT70.11319534282018111No Hit
GCTCGTAGTTGTGTCTGCACATCCTGTCCGGCACTGCCCGCTTCTCCTCC70.11319534282018111No Hit
CCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGTCGCTGTCGAAGCGCA70.11319534282018111No Hit
GGAGGTCCTTCTGGCTGTTCCAGTACTCGGCATCAGGCCGCCCCAGCTCC70.11319534282018111No Hit
GCCATACATTATCTGGATGGTGTGAGAACCGGCCTCGCTCTGGTTGTAGT70.11319534282018111No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)