FastQCFastQC Report
Wed 8 May 2024
EGAF00004963775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451233
Total Bases72.3 Mbp
Sequences flagged as poor quality0
Sequence length36-200
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGGTTGCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGAC7410.16421671287339357No Hit
CCCTTAACCTGGGCAGAGCCGTGGCTCAGGTCGAAGTGCGGGAAGTAGGT5580.12366116839858787No Hit
GCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGACTCAAAGAACC4880.10814811859948187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)