FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13471
Sequences flagged as poor quality0
Sequence length36-200
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCACCCGTAGAGTACTCCAAGAAACGTGGTCTGGTGTCCCCAGCCAAAG890.6606784945438349No Hit
CCTCCTGGTTATGGAAGTATCTGTCCAGGTACCGCACCCGCTCCGTCCCA730.5419048326033702No Hit
CGCACCCGTAGAGTACTCCAAGAAACGTGGTCTGGTGTCCCCAGCCAAAG580.4305545245341846No Hit
CCTCCTGGTTATGGAAGTATCTGTCCAGGAACCGCACCCGCTCCGTCCCA540.4008611090490684No Hit
GCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGTACTCCCCCACGTCGCT480.3563209858213941No Hit
GCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGTCGCT480.3563209858213941No Hit
TTATAGAAGTATCTGTCCAGGAACCGCACCCGCTCCGTCCCATTGAAGAA440.32662757033627793No Hit
CACCCGTAGAGTACTCCAAGAAACGTGGTCTGGTGTCCCCAGCCAAAGCC440.32662757033627793No Hit
TTATAGAAGTATCTGTCCAGGTACCGCACCCGCTCCGTCCCATTGAAGAA410.30435750872244083No Hit
GCGCTAGGCCGCCCCAGCTCCGTCACCGCCCGGTACTCCCCCACGTCGCT370.2746640932373246No Hit
CTCCACAACCCCGTAGTTGTGTCTGCAGTAGTTGTCCACCCGGCCCCGCT350.2598173854947665No Hit
GCACCGTGAAGCTCTCACCAACCCCGTAGTTGTGTCTGCAGTAGGTGTCC330.24497067775220843No Hit
GCAGCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGTCGCT260.19300720065325513No Hit
CCGCCTGGTTATGGAAGTATCTGTCCAGGTACCGCACCCGCTCCGTCCCA240.17816049291069705No Hit
CTCACCAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCAGGGCCCGCC230.170737139039418No Hit
GGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGAGGCTCCA210.15589043129685992No Hit
CTGTTCATACCCGCGGAGGAAGCGCCTGTCGGGCCCCAGCTCGCAGCCAT200.14846707742558088No Hit
GAGACAGCGTGGTGAGTCATATGCGTTTTGGGGGCGTCCGTGCGCTGCAG200.14846707742558088No Hit
GGTACAGGAAGTAGGCGGTGGTGGCCTGGCCAGCGAGGAGCAGAGTCACC150.11135030806918567No Hit
GTTCATACCCGCGGAGGAAGCGCCTGTCGGGCCCCAGCTCGCAGCCATGC150.11135030806918567No Hit
GTAGTTGTCCACCCGGCCCCGCTTCTGCTCCAGGAGGTCCTTCTGGCTGT150.11135030806918567No Hit
GCGCTAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGTCGCT140.10392695419790662No Hit
CACGTTCTCCTCCTGGTTATGGAAGTATCTGTCCAGGTACCGCACCCGCT140.10392695419790662No Hit
TGAGAGAAGTATCTGTCCAGGAACCGCACCCGCTCCGTCCCATTGAAGAA140.10392695419790662No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)