FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26192
Sequences flagged as poor quality0
Sequence length36-200
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGTTCTCCTCCTGGTTATGGAAGTATCTGTCCAGGTACCGCACCCGCT710.27107513744654854No Hit
TTATAGAAGTATCTGTCCAGGAACCGCACCCGCTCCGTCCCATTGAAGAA490.18708002443494198No Hit
GTCACGGCCTCGTCCAGCTCGTAGTTGTGTCTGCACATCCTGTCCGGCAC480.1832620647525962No Hit
GGCTCAACTCGCCGCTGCACTGTGAAGCTCTCCACAACCCCGTAGTTGTG420.16035430665852168No Hit
CTCCTCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGT410.15653634697617594No Hit
CCTTAGGGTTGCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGAC360.13744654856444716No Hit
CTCCACAACCCCGTAGTTGTGTCTGCAGTAGTTGTCCACCCGGCCCCGCT330.1259926695174099No Hit
CGGCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGTCG320.12217470983506415No Hit
CACGGTCTCCTCCTGGTTATGGAAGTATCTGTCCAGGTACCGCACCCGCT320.12217470983506415No Hit
GGTACAGGAAGTAGGCGGTGGTGGCCTGGCCAGCGAGGAGCAGAGTCACC310.11835675015271839No Hit
GAACATCTCATCTTCATCAAATTCAAACATAAACTCCCCTGTTGGTCTAT310.11835675015271839No Hit
TTATAGAAGTATCTGTCCAGGTACCGCACCCGCTCCGTCCCATTGAAGAA310.11835675015271839No Hit
ACTCCTCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACG310.11835675015271839No Hit
CTCCACAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCGCGGCGCGCC300.11453879047037263No Hit
GTAGTTGTCCACCCGGCCCCGCTTCTGCTCCAGGAGGTCCTTCTGGCTGT300.11453879047037263No Hit
GGGCCCGTTGGGAGGCCCAAGGGGCAAGAAGCATGGCCACCGAGGCTCCA300.11453879047037263No Hit
GGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGAGGCTCCA300.11453879047037263No Hit
GATACACAGTCACCTTAGGTTGGACTCGCCGCTGCACTGTGAAGCTCTCC300.11453879047037263No Hit
GGCTCAACTCGCCGCTGCACTGTGAAGCTCTCACCAACCCCGTAGTTGTG270.10308491142333535No Hit
CCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGTCGCTGTCGAAGCGCA270.10308491142333535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)