FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963795

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963795
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40795
Sequences flagged as poor quality0
Sequence length36-200
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACTGTGAAGCTCTCACCAACCCCGTAGTTGTGTCTGCACACGGTGTCC740.18139477877190832No Hit
GCACACGGTGTCCACCTGGCCCCGCCTGTCCTCCAGGATGTCCTTCTGGC730.17894349797769335No Hit
GAGACGGGATGGTGGGTCACGTGTGTCTTTGGGTGTTCCGCGCGCTGCAG510.12501532050496383No Hit
GGTACAGGAAGTAGGCGGTGGTGGCCTGGCCAGCGAGGAGCAGAGTCACC500.12256403971074886No Hit
CCTCCTGGTTATAGAAGAGTCTTTCCAGGAACTGCACCCGCTCCGTCCCG470.11521019732810393No Hit
CACTCACACTTAGCCTGCTCCAAGAAACGTGGTTGGGTGTCCCCAGCCAA450.11030763573967398No Hit
CTGCACACGGTGTCCACCTGGCCCCGCCTGTCCTCCAGGATGTCCTTCTG440.10785635494545899No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)