FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004963799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457040
Sequences flagged as poor quality0
Sequence length36-200
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGGTTGCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGAC13320.29144057412917906No Hit
GCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGACTCAAAGAACC10000.218799229826711No Hit
CCCTTAACCTGGGCAGAGCCGTGGCTCAGGTCGAAGTGCGGGAAGTAGGT8810.1927621214773324No Hit
GGAGTGGACAGATCCCCAAAGGACTCAAAGAACCTCTGGGTCCAAGGGTA7930.1735077892525818No Hit
GTGTGGCAAAGGTGCCCTTGAGGTTGTCCAGGTGAGCCAGGCCATCACTA6060.13259233327498687No Hit
GGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGAGGCTCCA5980.13084193943637318No Hit
CCGGAGGGTTGCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGAC5910.12931034482758622No Hit
GCGTTGGTCAGCGCGTCGGCCACCTTCTTGCCGTGGCCCTTAACCTGGGC5220.11421319796954316No Hit
GGGCAGAGCCGTGGCTCAGGTCGAAGTGCGGGAAGTAGGTCTTGGTGGTG4870.10655522492560826No Hit
AACCTGGGCAGAGCCGTGGCTCAGGTCGAAGTGCGGGAAGTAGGTCTTGG4800.1050236303168213No Hit
GCCCAGGGCCTCACCACCAACTTCATCCACGTTCACCTTGCCCCACAGGG4630.1013040434097672No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)