FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41906
Sequences flagged as poor quality0
Sequence length36-200
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACTTAGCCTGCTCCAAGAAACGTGGTTGGGTGTCCCCAGCCAAAGCC1140.2720374170763136No Hit
GGTACACGTAATTCTCTGGAGTGGCCCTGCCCTGGACCACAGATGTGAGC880.20999379563785614No Hit
CACACTTAGCCTGCTCCAAGAAACGTGGTCGGGTGTCCCCAGCCAAAGCC870.2076075025056078No Hit
TGTTTAACCTGCTCCAAGAAACGTGGTCGGGTGTCCCCAGCCAAAGCCAG820.195676036844366No Hit
CTCCTCCCGGTTGTAGATGTATCTCTCCAGGAAGCGCTGTGTCCCATTAA710.16942681238963395No Hit
CTCCACAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCGCGGCCCGCC620.14795017419939865No Hit
CTGTTCATACCCGCGGAGGAAGCGCCTGTCGGGCCCCAGCTCGCAGCCAT600.14317758793490193No Hit
CTCACCAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCGCGGCCCGCT580.1384050016704052No Hit
CTCCACAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCGCGGCCCGCT560.13363241540590845No Hit
TGTTTAACCTGCTCCAAGAAACGTGGTTGGGTGTCCCCAGCCAAAGCCAG500.11931465661241826No Hit
GGGACACGTAATTCTCTGGAGTGGCCCTGCCCTGGACCACAGATGTGAGC500.11931465661241826No Hit
GCCCGGTACTCCCCCACGTCGCTGTCGAAGCGCACGTACTCCTCTTGGTG470.11215577721567319No Hit
CGCCGCCCGGTTGTAGATGTATCTCTCCAGGAAGCGCTGTGTCCCATTAA450.10738319095117645No Hit
GGTACAGGAAGTAGGCGGTGGTGGCCTGGCCAGCGAGGAGCAGAGTCACC420.10022431155443133No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)