FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12917
Sequences flagged as poor quality0
Sequence length36-200
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATAGAAGTATCTGTCCAGGAACCGCACCCGCTCCGTCCCATTGAAGAA370.2864442207943021No Hit
CTCCAGTAACCGCACCCGCTCCGTCCCATTGAAGAAATAACACTCACCCG280.2167685995200124No Hit
GGCTCAACTCGCCGCTGCACTGTGAAGCTCTCACCAACCCCGTAGTTGTG270.20902686382286909No Hit
GGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGAGGCTCCA250.19354339242858248No Hit
CTCCAGTAACCGCACCCGCTCCGTCCCGTTGAAGAAATGACACTCATACT240.1858016567314392No Hit
TTATAGAAGTATCTGTCCAGTAACCGCACCCGCTCCGTCCCATTGAAGAA220.17031818533715257No Hit
CAAGTCCTCCTCTTGGTTATAGATGTCTCTGTGCAGGAACCGCACCCGCT220.17031818533715257No Hit
GTCACGGCCTCGTCCAGCTCGTAGTTGTGTCTGCATACCCTGTCCGGCAC190.1470929782457227No Hit
GCACATCCTGTCCGGCACTGCCCGCTTCTCCTCCAGGATGTCCTTCTGGC180.1393512425485794No Hit
GTCTCTCCAGTAACCGCACCCGCTCCGTCCCATTGAAGAAATGACACTCC170.13160950685143608No Hit
GTAATTGTCCACCTGGCCCCGCTTCTGCTCCAGGAGGTCCTTCTGGCTGT160.1238677711542928No Hit
GGGCCCGTTGGGAGGCCCAAGGGGCAAGAAGCATGGCCACCGAGGCTCCA140.1083842997600062No Hit
GGTCTGGTGTCCCCAGCCAAAGCCAGTGGGGAGCTCAGCACCATCAGTGT130.1006425640628629No Hit
GATACACAGTCACCTTAGGTTGGACTCGCCGCTGCACTGTGAAGCTCTCC130.1006425640628629No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)