FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40314
Sequences flagged as poor quality0
Sequence length36-200
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCACCGGGGTGCTCAGCATCGCCAGCATCAAGGTCACAGTTGCTACCCG870.2158059235005209No Hit
CACGTTCTCCTCCTGGTTATGGAAGTATCTGTCCAGGAACCGCACCCGCT860.21332539564419306No Hit
CTGCACACGGTGTCCACCTGGCCCCGCCTGTCCTCCAGGATGTCCTTCTG750.186039589224587No Hit
CCTCAGGATGGACTCGCCGCTGCACTGTGAAGCTCTCACCAACCCCGTAG630.15627325494865307No Hit
CACGGTCTCCTCCTGGTTATGGAAGTATCTGTCCAGGAACCGCACCCGCT600.1488316713796696No Hit
GGTACACGTAATTCTCTGGAGTGGCCCTGCCCTGGACCACAGATGTGAGC590.14635114352334178No Hit
GCACACGGTGTCCACCTGGCCCCGCCTGTCCTCCAGGATGTCCTTCTGGC570.14139008781068613No Hit
CTCCTCCCGGTTGTAGATGTATCTCTCCAGGAAGCGCTGTGTCCCATTAA560.13890955995435827No Hit
CCTTAGGATGGACTCGCCGCTGCACTGTGAAGCTCTCACCAACCCCGTAG480.11906533710373567No Hit
CTGCACACGGTGTCCACCGCGGCCCGCTCGTCTTCCAGGATGTCCTTCTG440.10914322567842437No Hit
GCCACCGGGGTGCTCAGCATCGCCAGCATCAAGGTGACAGTTGCTACCCG440.10914322567842437No Hit
CGCCGCCCGGTTGTAGATGTATCTCTCCAGGAAGCGCTGTGTCCCATTAA430.10666269782209653No Hit
GAGACAGCGTGGTGAGTCATATGCGTCTTGGGGGCGTCCGTGCGCTGCAG430.10666269782209653No Hit
GCACTGTGAAGCTCTCACCAACCCCGTAGTTGTGTCTGCACACGGTGTCC410.10170164210944088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)