FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13044
Sequences flagged as poor quality0
Sequence length36-200
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATAGAAGTATCTGTCCAGGAACCGCACCCGCTCCGTCCCATTGAAGAA450.34498620055197793No Hit
GAACATCTCATCTTCATCAAATTCAAACATAAACTCCCCTGTTGGTCTAT360.27598896044158233No Hit
CGCCCGATACACCCCCACGTCGCTGTCGAAGCGCACGTACTCCTCTCGGT320.24532352039251765No Hit
GAACTGCTCATCTTCATCAAATTCAAACATAAACTCCCCTGTTGGTCTAT260.19932536031892056No Hit
GCCTCCGCTCCAGGAGGTCCTTCTGGCTGTTCCAGTGCTCCGCAGCAGGC230.17632628028212205No Hit
GCACATCCTGTCCGGCACTGCCCGCTCCTCCTCCAGGATGTCCTTCTGGC230.17632628028212205No Hit
GTCACGGCCTCGTCCAGCTCGTAGTTGTGTCTGCATACCCTGTCCGGCAC220.16865992026985588No Hit
CCAGCAGGTTGTGGTGCTGCAGGGGCTGGGTCTTTGAAGGATACACAGTC220.16865992026985588No Hit
CACCCCGCACGCGCTCCGTCCCGTTGGTGAAGTAGCACAGGCCCTTAAAC220.16865992026985588No Hit
GGTCTGGTGTCCCCAGCCAAAGCCAGTGGGGAGCTCAGCACCATCAGTGT200.1533272002453235No Hit
CAAGTCCTCCTCTTGGTTATAGATGTCTCTGTGCAGGAACCGCACCCGCT200.1533272002453235No Hit
GCATACCCTGTCCGGCACTGCCCGCTCCTCCTCCAGGATGTCCTTCTGGC200.1533272002453235No Hit
CGCCCGATACACCCCCACGTCGCTGTCGAAGCGCGCGTACTCCTCTCGGT190.14566084023305734No Hit
CTCCACAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCGCGGCCCGCG190.14566084023305734No Hit
GGCTCAACTCGCCGCTGCACTGTGAAGCTCTCCACAACCCCGTAGTTGTG170.130328120208525No Hit
GCATACCCTGTCCGGCACTGCCCGCTTCTCCTCCAGGAGGTCCTTCTGGC170.130328120208525No Hit
GGCTCAACTCGCCGCTGCACTGTGAAGCTCTCACCAACCCCGTAGTTGTG160.12266176019625882No Hit
CAGTACTCCTCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCC160.12266176019625882No Hit
CTCCACAACCCCGTAGTTGTGTCTGCAATAGGTGTCCACCTCGGCCCGCC140.10732904017172647No Hit
GAGACAGCGTGGTGAGTCATATGCGTCTTGGGGGCGTCCGTGCGCTGCAG140.10732904017172647No Hit
GTAATTGTCCACCTGGCCCCGCTTCTGCTCCAGGAGGTCCTTCTGGCTGT140.10732904017172647No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)