FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004963841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences679575
Sequences flagged as poor quality0
Sequence length36-200
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGGTTGCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGAC12050.17731670529374977No Hit
GCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGACTCAAAGAACC8500.12507817385866166No Hit
GGAGTGGACAGATCCCCAAAGGACTCAAAGAACCTCTGGGTCCAAGGGTA6840.10065114225802892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)