FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15235
Sequences flagged as poor quality0
Sequence length36-200
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTAGAGTACTCCAAGAAACGTGGTCTGGTGTCCCCAGCCAAAGCCAG440.2888086642599278No Hit
GTCCTCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGT440.2888086642599278No Hit
GCACATCCTGTCCGGCACTGCCCGCTTCTCCTCCAGGATGTCCTTCTGGC400.26255333114538887No Hit
GCGCTAGGCCGCCCCAGCTCCGTCACCGCCCGGTACTCCCCCACGTCGCT380.24942566458811946No Hit
GTCACGGCCTCGTCCAGCTCGTAGTTGTGTCTGCATACCCTGTCCGGCAC330.21660649819494585No Hit
GTCACGGCCTCGTCCAGCTCGTAGTTGTGTCTGCACATCCTGTCCGGCAC310.20347883163767644No Hit
CCTCTTGGTTATAGAAGTATCTGTCCAGGAACCGCACCCGCTCCGTCCCA290.19035116508040695No Hit
GCACCGTGAAGCTCTCACCAACCCCGTAGTTGTGTCTGCAGTAGGTGTCC260.17065966524450277No Hit
GGTACAGGAAGTAGGCGGTGGTGGCCTGGCCAGCGAGGAGCAGAGTCACC260.17065966524450277No Hit
GCACATCCTGTCCGGCACTGCCCGCTTCTCCTCCAGGAGGTCCTTCTGGC250.16409583196586808No Hit
GCATACCCTGTCCGGCACTGCCCGCTTCTCCTCCAGGATGTCCTTCTGGC230.15096816540859861No Hit
GAGACAGCGTGGTGAGTCATATGCGTTTTGGGGGCGTCCGTGCGCTGCAG230.15096816540859861No Hit
GCATACCCTGTCCGGCACTGCCCGCTTCTCCTCCAGGAGGTCCTTCTGGC220.1444043321299639No Hit
GGTCATACCCGCGGAGGAGGCGCCCGTCGGGCCCCACGTCGCAGCCATAC220.1444043321299639No Hit
GGGTCTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGG200.13127666557269443No Hit
CCGCTGCACCGTGAAGCTCTCACCAACCCCGTAGTTGTGTCTGCAGTAGG180.118148999015425No Hit
CCTTAGGATGGACTCGCCGCTGCACCGTGAAGCTCTCACCAACCCCGTAG170.1115851657367903No Hit
GGTTCTGGGAGGTGACTGTCAGTTTGTCCAGCCGGCCCTGCTGCTGGTAC170.1115851657367903No Hit
GGCTTGGGAGGCTTGGGAAGCTTCATGCGCAGGTTCTCCAGCTGCAGGTT160.10502133245815556No Hit
GTCCAGGAACCGCACCCGCTCCGTCCCATTGAAGAAATAACACTCACCCG160.10502133245815556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)