FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963863

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963863
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11141
Sequences flagged as poor quality0
Sequence length36-200
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCGCGGCCCGCCTCTGCTCCAGGAGGTCCTTCTGGCTGTTCCAGTAC570.5116237321604883No Hit
GTACACCCCCACGTCGCTGTCGAAGCGCACGTACTCCTCTCGGTTATAGA200.1795170990036801No Hit
GGACTTCCTTCTGGCTGTTCCAGTACTCGGCAACAGGCCGCCCCTGCGGC190.1705412440534961No Hit
GGTACAGGAAGTAGGCGGTGGTGGCCTGGCCAGCGAGGAGCAGAGTCACC190.1705412440534961No Hit
GTACTCCCCCACGTCGCTGTCGAAGCGCACGGACTCCTCTTGGTTATAGA180.16156538910331208No Hit
GGGTCTTTGAAGGATACACAGTCACCTTAGGCTCAACTCGCCGCTGCACT150.13463782425276008No Hit
GTGAAGCTCTCACCAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCGC140.1256619693025761No Hit
CTCCAGGACTTCCTTCTGGCTGTTCCAGTACTCGGCAACAGGCCGCCCCT140.1256619693025761No Hit
ACTCCTCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACG140.1256619693025761No Hit
CCGCTGCACTGTGAAGCTCTCACCAACCCCGTAGTTGTGTCTGCAGTAGG130.11668611435239205No Hit
CTGTTCATACCCGCGGAGGAAGCGCCCGTCGGGCCCCAGCTCGCAGCCAT130.11668611435239205No Hit
GCACTGTGAAGCTCTCACCAACCCCGTAGTTGTGTCTGCAGTAGGTGTCC130.11668611435239205No Hit
CTCCTCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGT120.10771025940220806No Hit
GTGTCTCCCGGTCCCAATACTCCGGCCCCTCCTGCTCCACCCACGGCGCC120.10771025940220806No Hit
GGAGGTCCTTCTGGCTGTTCCAGTACTCGGCATCAGGCCGCCCCAGCTCC120.10771025940220806No Hit
ATCTTCCTCCACTCAGCATCTTGCTCACAGGCTTGGGAGGCTTGGGAAGC120.10771025940220806No Hit
GGTTCTGGGAGGTGACTGTCAGTTTGTCCAGCCGGCCCTGCTGCTGGTAC120.10771025940220806No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)