FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15354
Sequences flagged as poor quality0
Sequence length36-200
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGT690.4493942946463462No Hit
GGATAGACTCGCCGCTGCACTGTGAAGCTCTCCACAACCCCGTAGTTGTG520.33867396118275367No Hit
CTCGTCTTCCAGGATGTCCTTCTGGCTGTTCCAGTACTCGGCATCAGGCC430.2800573140549694No Hit
GCCACCGGGGTGCTCAGCATCGCCAGCATCAAGGTCACAGTTGCTACCCG420.2735443532629933No Hit
CCTCCTGGTTATGGAAGTATCTGTCCAGGAACCGCACCCGCTCCGTCCCA350.2279536277191611No Hit
CCTCAGGATAGACTCGCCGCTGCACTGTGAAGCTCTCCACAACCCCGTAG340.2214406669271851No Hit
GTAATTGTCCACCCGGCCCCGCTTCTGCTCCAGGAGGTCCTTCTGGCTGT220.1432851374234727No Hit
CGCCGCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGT190.12374625504754462No Hit
GCCACCGGGGTGCTCAGCATCGCCAGCATCAAGGTGACAGTTGCTACCCG190.12374625504754462No Hit
GCACTGTGAAGCTCTCCACAACCCCGTAGTTGTGTCTGCAGTAGGTGTCC180.11723329425556857No Hit
CGCGGCTTCCAGGATGTCCTTCTGGCTGTTCCAGTACTCGGCATCAGGCC170.11072033346359254No Hit
ACTCCTCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACG170.11072033346359254No Hit
GAGACGGGATGGTGGGTCACGTGTGTCTTTGGGTGTTCCGCGCGCTGCAG160.10420737267161652No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)