FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963889

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963889
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13534
Sequences flagged as poor quality0
Sequence length36-200
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGTAGCGCGCGTACTCCTCTTGGTTATGGACGCGTCTTTCCAGCAACC590.4359391162996897No Hit
CCTCCTGGTTATAGAAGTATCTGTCCAGGAACCGCACCCGCTCCGTCCCA370.2733855475099749No Hit
CTCCACAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCGCGGCCCGCG350.2586079503472736No Hit
CCTGTCTTCCAGGAAGTCCTTCTGGCTGTTCCAGTACTCAGCGTCAGGCC340.25121915176592285No Hit
GGCTCAACTCGCCGCTGCACTGTGAAGCTCTCACCAACCCCGTAGTTGTG330.24383035318457216No Hit
CGGCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGTACTCCCCCACGTCG260.1921087631151175No Hit
GGTCTGGTGTCCCCAGCCAAAGCCAGTGGGGAGCTCAGCACCATCAGTGT230.16994236737106547No Hit
CCTGTCTTCCAGGAAGTCCTTCTGGCTGTTCCAGTACTCGGCATCAGGCC220.16255356878971478No Hit
CCTCTTGGTTATGGACGCGTCTTTCCAGCAACCGCACCCGCTCCGTCCCG210.1551647702083641No Hit
GGCGGAGCGCGCGTACTCCTCTTGGTTATGGACGCGTCTTTCCAGCAACC210.1551647702083641No Hit
TGGACGCGTCTTTCCAGCAACCGCACCCGCTCCGTCCCGTTGAAGAAATG210.1551647702083641No Hit
CACCCCGCACGCGCTCCGTCCCGTTGGTGAAGTAGCACAGGCCCTTAAAC210.1551647702083641No Hit
CAGCTTTGCCATGTAGGAACCTCCAGGGAGCTTCAGACACACCATGCTGG190.14038717304566278No Hit
CTCACCAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCGCGGCCCGCG180.13299837446431212No Hit
GCCTCCGCTCCAGGAGGTCCTTCTGGCTGTTCCAGTACTCGGCATCAGGC160.11822077730161075No Hit
GAGACGGGATGGTGGGTCACGTGTGTCTTTGGGTGTTCCGCGCGCTGCAG150.11083197872026009No Hit
CTCAAACTTAACCTCCTCCAAGAAACGTGGTCTGGTGTCCCCAGCCAAAG150.11083197872026009No Hit
GAGACAGCGTGGTGAGTCATATGCGTCTTGGGGGGGTCCGTGCGCTGCAG140.10344318013890941No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)