FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11964
Sequences flagged as poor quality0
Sequence length36-200
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGT570.4764292878635908No Hit
GGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGAGGCTCCA360.3009027081243731No Hit
GGGCCCGTTGGGAGGCCCAAGGGGCAAGAAGCATGGCCACCGAGGCTCCA330.275827482447342No Hit
GGCTCAACTCGCCGCTGCACTGTGAAGCTCTCACCAACCCCGTAGTTGTG320.26746907388833163No Hit
CCTCCTGGTTATAGAAGAGTCTTTCCAGGAACTGCACCCGCTCCGTCCCG280.2340354396522902No Hit
CTGCACACGGTGTCCACCTGGCCCCGCCTGTCCTCCAGGATGTCCTTCTG280.2340354396522902No Hit
CCACCGCGGCCCGCCTCTGCTCCAGGAGGTCCTTCTGGCTGTTCCAGTAC270.22567703109327986No Hit
GAGACAGCGTGGTGAGTCATATGCGTCTTGGGGGCGTCCGTGCGCTGCAG180.15045135406218654No Hit
CCCCAGCTCCGTCACCGCCCGGTACTCCCCCACGTCGCTGTCGAAGCGCA170.1420929455031762No Hit
GCACACGGTGTCCACCTGGCCCCGCCTGTCCTCCAGGATGTCCTTCTGGC170.1420929455031762No Hit
GCACTGTGAAGCTCTCACCAACCCCGTAGTTGTGTCTGCACACGGTGTCC160.13373453694416582No Hit
CCCTTAACCTGGGCAGAGCCGTGGCTCAGGTCGAAGTGCGGGAAGTAGGT160.13373453694416582No Hit
CCTTAGGGTTGCCCATAACAGCATCAGGAGTGGACAGATCCCCAAAGGAC150.12537612838515547No Hit
CTGCACACGGTGTCCACCGCGGCCCGCCTCTGCTCCAGGAGGTCCTTCTG140.1170177198261451No Hit
CGCGTACTCCTCTTGGTTATAGATGTATCTGATCAGGTTCCACACTCGCT130.10865931126713474No Hit
AGAAGAGTCTTTCCAGGAACTGCACCCGCTCCGTCCCGTTGAAGAAATGA130.10865931126713474No Hit
GGACTTCCTTCTGGCTGTTCCAGTACTCGGCAACAGGCCGCCCCTGCGGC120.10030090270812438No Hit
GGTTCTGGGAGGTGACTGTCAGTTTGTCCAGCCGGCCCTGCTGCTGGTAC120.10030090270812438No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)