FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963897

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963897
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12434
Sequences flagged as poor quality0
Sequence length36-200
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGT1020.8203313495254947No Hit
ACTCCTCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACG300.24127392633102782No Hit
CTGCACACGGTGTCCACCTGGCCCCGCCTGTCCTCCAGGATGTCCTTCTG240.19301914106482226No Hit
GGTCTGGTGTCCCCAGCCAAAGCCAGTGGGGAGCTCAGCACCATCAGTGT200.16084928422068523No Hit
GAGACAGCGTGGTGAGTCATATGCGTTTTGGGGGCGTCCGTGCGCTGCAG180.1447643557986167No Hit
CTCCACAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCGCGGCCCGCT180.1447643557986167No Hit
GGTCATACCCGCGGAGGAGGCGCCCGTCGGGCCCCACGTCGCAGCCATAC170.13672189158758244No Hit
CCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGTCGCTGTCGAAGCGCA170.13672189158758244No Hit
CGCCGCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGT170.13672189158758244No Hit
CCTCAGGATGGACTCGCCGCTGCACTGTGAAGCTCTCACCAACCCCGTAG160.1286794273765482No Hit
GCCACTGGGGTGCTCAGCATCGCCAGCATCAAGGTGACAGTTGCTACCCG160.1286794273765482No Hit
GCCACTGGGGTGCTCAGCATCGACAGCATCAAGGTCACAGTTGCTGCCCG160.1286794273765482No Hit
GCACACGGTGTCCACCTGGCCCCGCCTGTCCTCCAGGATGTCCTTCTGGC150.12063696316551391No Hit
CACGTTCTCCTCCTGGTTATGGAAGTATCTGTCCAGGAACCGCACCCGCT130.10455203474344539No Hit
GACCCGTCCTCGCTCTGGTTGTAGTAGCCGCGCAGTTTCCGCAGGTTCAC130.10455203474344539No Hit
CTCACCAACCCCGTAGTTGTGTCTGCACACGGTGTCCACCTGGCCCCGCC130.10455203474344539No Hit
CAGCTATGTTGGCCAATGCACCTTGAGCCTCAAAGCTGGCAAATCGTCCA130.10455203474344539No Hit
CGCCGCAGCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGT130.10455203474344539No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)