FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35530
Sequences flagged as poor quality0
Sequence length36-200
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGTTCTCCTCCTGGTTATGGAAGTATCTGTCCAGGAACCGCACCCGCT1020.28708133971291866No Hit
TTATAGAAGTATCTGTCCAGGAACCGCACCCGCTCCGTCCCATTGAAGAA920.2589361103292992No Hit
GTCACGGCCTCGTCCAGCTCGTAGTTGTGTCTGCACATCCTGTCCGGCAC910.2561215873909372No Hit
GGCTCAACTCGCCGCTGCACTGTGAAGCTCTCACCAACCCCGTAGTTGTG680.19138755980861244No Hit
GGCTCAACTCGCCGCTGCACTGTGAAGCTCTCCACAACCCCGTAGTTGTG620.17450042217844075No Hit
CACGGTCTCCTCCTGGTTATGGAAGTATCTGTCCAGGAACCGCACCCGCT510.14354066985645933No Hit
CCGCCTCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGTCG500.14072614691809737No Hit
GGCACGGCCTCGTCCAGCTCGTAGTTGTGTCTGCACATCCTGTCCGGCAC480.13509710104137349No Hit
CTCCACAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCGCGGCCCGCT460.1294680551646496No Hit
CGGCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGTCG460.1294680551646496No Hit
GAACATCTCATCTTCATCAAATTCAAACATAAACTCCCCTGTTGGTCTAT450.12665353222628764No Hit
GGTCTGGTGTCCCCAGCCAAAGCCAGTGGGGAGCTCAGCACCATCAGTGT440.12383900928792571No Hit
CTCCACAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCGCGGCCCGCG420.1182099634112018No Hit
GATACACAGTCACCTTAGGCTCAACTCGCCGCTGCACTGTGAAGCTCTCA380.10695187165775401No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)