FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8681
Sequences flagged as poor quality0
Sequence length36-200
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGT931.0713051491763623No Hit
CCCCAGCTCCGTCACCGCCCGGTACTCCCCCACGTCGCTGTCGAAGCGCA200.23038820412394886No Hit
CCACCGCGGCCCGCCTCTGCTCCAGGAGGTCCTTCTGGCTGTTCCAGTAC200.23038820412394886No Hit
CCTCTTGGTTATAGATGCATCTTTCCAGCAACCGCACCCGCTCCGTCCCA190.21886879391775138No Hit
CCTCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGTCG170.1958299735053565No Hit
ACTCCTCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACG150.17279115309296164No Hit
GTACACCCCCACGTCGCTGTCGAAGCGCACGTACTCCTCTCGGTTATAGA150.17279115309296164No Hit
ACATAGAACATCTCATCTTCATCAAATTCAAACATAAACTCCCCTGTTGG140.16127174288676419No Hit
GGACTTCCTTCTGGCTGTTCCAGTACTCGGCAACAGGCCGCCCCTGCGGC130.14975233268056676No Hit
GTACTCCCCCACGTCGCTGTCGAAGCGCACGGACTCCTCTTGGTTATAGA130.14975233268056676No Hit
GGGTCTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGG130.14975233268056676No Hit
CCCCCACGTCGCTGTCGAAGCGCACGGACTCCTCTTGGTTATAGATGCAT130.14975233268056676No Hit
CAGTTACCTCTGGAGGTACATTGGTGATCGGAGTATAGTTGGAGCGCTTT120.1382329224743693No Hit
CTCCAGGACTTCCTTCTGGCTGTTCCAGTACTCGGCAACAGGCCGCCCCT120.1382329224743693No Hit
GGTACAGGAAGTAGGCGGTGGTGGCCTGGCCAGCGAGGAGCAGAGTCACC120.1382329224743693No Hit
CGCCGCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGT120.1382329224743693No Hit
ATCTTCCTCCACTCAGCATCTTGCTCACAGGCTTGGGAGGCTTGGGAAGC110.12671351226817187No Hit
CGCCGCTTCAGGCCGCCCCAGCTCCGTCACCGCCCGGAACTCCCCCACGT100.11519410206197443No Hit
GAGACGGGATGGTGGGTCACGTGTGTCTTTGGGTGTTCCGCGCGCTGCAG100.11519410206197443No Hit
CAGCTATGTTGGCCAATGCACCTTGAGCCTCAAAGCTGGCAAATCGTCCA100.11519410206197443No Hit
GAGTATAGTTGGAGCGCTTTGTCATGATTTCCAGGTTGGCTTTGTCCACA100.11519410206197443No Hit
GTTATAGATGTGTCTGGTCACACCCCGCACGCGCTCCGTCCCGTTGGTGA100.11519410206197443No Hit
ACTCCTCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGTACTCCCCCACG90.10367469185577699No Hit
TTCCAGTACTCGGCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGTACTC90.10367469185577699No Hit
GTCCGGCACTGCCCGCTTCTCCTCCAGGATGTCCTTCTGGCTGTTCCAGT90.10367469185577699No Hit
CCTCCCGGTTGTAGATGTATCTCTCCAGGAAGCGCTGTGTCCCATTAAAC90.10367469185577699No Hit
CACCCGCTCCGTCCCATTGAAGAAATGACATTCAAACTTAAGCTGCCACA90.10367469185577699No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)