FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004963905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004963905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23104
Sequences flagged as poor quality0
Sequence length36-200
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATACTTATCCTGCTGCAAGAAACGTGGTCGGGTGTCCCCAGCCAAAGCC700.3029778393351801No Hit
CCTCCTGGTTATAGAAGTATCTGTCCAGGAACCGCACCCGCTCCGTCCCA500.21641274238227148No Hit
CTCCACAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCGCGGCCCGCG370.1601454293628809No Hit
CCTCCTGGTTATAGAAGTATCTGTCCAGGAACCGCACCCGCTCCGTCCCG370.1601454293628809No Hit
GCCACCGGGGTGCTCAGCATCGCCAGCATCAAGGTCACAGTTGCTACCCG350.15148891966759004No Hit
CAGACTTATCCTGCTGCAAGAAACGTGGTCGGGTGTCCCCAGCCAAAGCC320.13850415512465375No Hit
GAGACAGCGTGGTGAGTCATATGCGTCTTGGGGGCGTCCGTGCGCTGCAG280.12119113573407202No Hit
GCACTGTGAAGCTCTCACCAACCCCGTAGTTGTGTCTGCAGTAGGTGTCC280.12119113573407202No Hit
CTCCACAACCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCGCGGCCCGCT270.11686288088642659No Hit
GAGACGGGATGGTGGGTCACGTGTGTCTTTGGGTGTTCCGCGCGCTGCAG270.11686288088642659No Hit
CGGCATCAGGCCGCCCCAGCTCCGTCACCGCCCGGTACTCCCCCACGTCG250.10820637119113574No Hit
GGCTCAACTCGCCGCTGCACTGTGAAGCTCTCACCAACCCCGTAGTTGTG250.10820637119113574No Hit
GCCACCGGGGTGCTCAGCATCGCCAGCATCAAGGTGACAGTTGCTACCCG250.10820637119113574No Hit
CATACTTATCCTGCTCCAAGAAACGTGGTCGGGTGTCCCCAGCCAAAGCC240.10387811634349031No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)